ashwin .D
2017-06-17 13:50:45 UTC
Hello Gilles,
I am enclosing all the information you requested.
1) as an attachment I enclose the log file
2) I did rebuild OpenMPI 2.1.1 with the --enable-debug feature and I
reinstalled it /usr/lib/local.
I ran all the examples in the examples directory. All passed except
oshmem_strided_puts where I got this message
[[48654,1],0][pshmem_iput.c:70:pshmem_short_iput] Target PE #1 is not in
valid range
--------------------------------------------------------------------------
SHMEM_ABORT was invoked on rank 0 (pid 13409, host=a-Vostro-3800) with
errorcode -1.
--------------------------------------------------------------------------
3) I deleted all old OpenMPI versions under /usr/local/lib.
4) I am using the COSMO weather model - http://www.cosmo-model.org/ to run
simulations
The support staff claim they have seen no errors with a similar setup. They
use
1) gfortran 4.8.5
2) OpenMPI 1.10.1
The only difference is I use OpenMPI 2.1.1.
5) I did try this option as well mpirun --mca btl tcp,self -np 4 cosmo. and
I got the same error as in the mpi_logs file
6) Regarding compiler and linking options on Ubuntu 16.04
mpif90 --showme:compile and --showme:link give me the options for compiling
and linking.
Here are the options from my makefile
-pthread -lmpi_usempi -lmpi_mpifh -lmpi for linking
7) I have a 64 bit OS.
Well I think I have responded all of your questions. In any case I have not
please let me know and I will respond ASAP. The only thing I have not done
is look at /usr/local/include. I saw some old OpenMPI files there. If those
need to be deleted I will do after I hear from you.
Best regards,
Ashwin.
I am enclosing all the information you requested.
1) as an attachment I enclose the log file
2) I did rebuild OpenMPI 2.1.1 with the --enable-debug feature and I
reinstalled it /usr/lib/local.
I ran all the examples in the examples directory. All passed except
oshmem_strided_puts where I got this message
[[48654,1],0][pshmem_iput.c:70:pshmem_short_iput] Target PE #1 is not in
valid range
--------------------------------------------------------------------------
SHMEM_ABORT was invoked on rank 0 (pid 13409, host=a-Vostro-3800) with
errorcode -1.
--------------------------------------------------------------------------
3) I deleted all old OpenMPI versions under /usr/local/lib.
4) I am using the COSMO weather model - http://www.cosmo-model.org/ to run
simulations
The support staff claim they have seen no errors with a similar setup. They
use
1) gfortran 4.8.5
2) OpenMPI 1.10.1
The only difference is I use OpenMPI 2.1.1.
5) I did try this option as well mpirun --mca btl tcp,self -np 4 cosmo. and
I got the same error as in the mpi_logs file
6) Regarding compiler and linking options on Ubuntu 16.04
mpif90 --showme:compile and --showme:link give me the options for compiling
and linking.
Here are the options from my makefile
-pthread -lmpi_usempi -lmpi_mpifh -lmpi for linking
7) I have a 64 bit OS.
Well I think I have responded all of your questions. In any case I have not
please let me know and I will respond ASAP. The only thing I have not done
is look at /usr/local/include. I saw some old OpenMPI files there. If those
need to be deleted I will do after I hear from you.
Best regards,
Ashwin.