[OMPI users] error building openmpi-master-201810050304-5f1c940 on Linux with Sun C

[Siegmar Gross]

Hi,

I've tried to install openmpi-master-201810050304-5f1c940 on my "SUSE Linux
Enterprise Server 12.3 (x86_64)" with Sun C 5.15 (Oracle Developer Studio
12.6). Unfortunately, I get the following error.


loki openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc 128 head -7
config.log | tail -1
$ ../openmpi-master-201810050304-5f1c940/configure
--prefix=/usr/local/openmpi-master_64_cc
--libdir=/usr/local/openmpi-master_64_cc/lib64
--with-jdk-bindir=/usr/local/jdk-10.0.1/bin
--with-jdk-headers=/usr/local/jdk-10.0.1/include JAVA_HOME=/usr/local/jdk-10.0.1
LDFLAGS=-m64 -mt -Wl,-z -Wl,noexecstack -L/usr/local/lib64 CC=cc CXX=CC FC=f95
CFLAGS=-m64 -mt CXXFLAGS=-m64 FCFLAGS=-m64 CPP=cpp CXXCPP=cpp
--disable-mpi-fortran --enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java
--with-valgrind=/usr/local/valgrind --with-hwloc=internal --without-verbs
--with-wrapper-cflags=-std=c11 -m64 -mt --with-wrapper-cxxflags=-m64
--with-wrapper-fcflags=-m64 --with-wrapper-ldflags=-mt --enable-debug
loki openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc 129


loki openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc 131 tail -27
log.make.Linux.x86_64.64_cc
Making all in tools/wrappers
make[2]: Entering directory
'/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers'
GENERATE opal_wrapper.1
CC opal_wrapper.o
CCLD opal_wrapper
opal_wrapper.o: In function `opal_atomic_mb':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:64:
undefined reference to `atomic_thread_fence'
opal_wrapper.o: In function `opal_atomic_wmb':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:69:
undefined reference to `atomic_thread_fence'
opal_wrapper.o: In function `opal_atomic_rmb':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:74:
undefined reference to `atomic_thread_fence'
opal_wrapper.o: In function `opal_atomic_lock_init':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:210:
undefined reference to `atomic_flag_clear'
opal_wrapper.o: In function `opal_atomic_trylock':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:216:
undefined reference to `atomic_flag_test_and_set'
opal_wrapper.o: In function `opal_atomic_unlock':
/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers//../../../../openmpi-master-201810050304-5f1c940/opal/include/opal/sys/atomic_stdc.h:229:
undefined reference to `atomic_flag_clear'
postopt: error: ld failed to link the binary
cc: postopt failed for .libs/opal_wrapper
Makefile:1873: recipe for target 'opal_wrapper' failed
make[2]: *** [opal_wrapper] Error 2
make[2]: Leaving directory
'/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal/tools/wrappers'
Makefile:2377: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
'/export2/src/openmpi-master/openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc/opal'
Makefile:1895: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
loki openmpi-master-201810050304-5f1c940-Linux.x86_64.64_cc 132



I would be grateful, if somebody can fix the problem. Do you need anything
else? Thank you very much for any help in advance.


Kind regards

Siegmar