[OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t

Discussion:

[OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

Limin Gu

2016-09-27 15:12:17 UTC

Hi,

I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2,
Any idea what might have caused this problem?

Thank you!

make[2]: Entering directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

CC class/opal_bitmap.lo

CC class/opal_free_list.lo

CC class/opal_hash_table.lo

CC class/opal_hotel.lo

CC class/opal_tree.lo

CC class/opal_list.lo

CC class/opal_graph.lo

CC class/opal_object.lo

CC class/opal_lifo.lo

CC class/opal_fifo.lo

CC class/opal_pointer_array.lo

CC class/opal_value_array.lo

CC class/opal_ring_buffer.lo

CC class/opal_rb_tree.lo

CC errhandler/opal_errhandler.lo

CC memoryhooks/memory.lo

CC runtime/opal_progress.lo

CC runtime/opal_finalize.lo

CC runtime/opal_init.lo

CC runtime/opal_params.lo

CC runtime/opal_info_support.lo

CC runtime/opal_progress_threads.lo

CC threads/condition.lo

CC threads/mutex.lo

CC threads/thread.lo

CC threads/wait_sync.lo

CC dss/dss_internal_functions.lo

CC dss/dss_compare.lo

CC dss/dss_copy.lo

CC dss/dss_dump.lo

CC dss/dss_load_unload.lo

CC dss/dss_lookup.lo

CC dss/dss_pack.lo

CC dss/dss_peek.lo

CC dss/dss_print.lo

CC dss/dss_register.lo

CC dss/dss_unpack.lo

CC dss/dss_open_close.lo

CCLD libopen-pal.la

mca/pmix/s1/.libs/libmca_pmix_s1.a(libmca_pmix_s1_la-pmix_s1.o):(.data.rel+0x0):
multiple definition of `pmi_opcaddy_t_class'

mca/pmix/s2/.libs/libmca_pmix_s2.a(libmca_pmix_s2_la-pmix_s2.o):(.data.rel+0x0):
first defined here

collect2: ld returned 1 exit status

make[2]: *** [libopen-pal.la] Error 1

make[2]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

make[1]: *** [all-recursive] Error 1

make[1]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

make: *** [all-recursive] Error 1

error: Bad exit status from /var/tmp/rpm-tmp.EtuXQa (%build)

--

*Limin Gu* | Software Engineer

____________________________

*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538

*p.* *415.954.2800 <415.954.2800>*

*e. ****@penguincomputing.com <***@penguincomputing.com>

*Changing the world through technical innovation*

www.penguincomputing.com

www.penguincomputing.iapplicants.com

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Gilles Gouaillardet

2016-09-27 15:51:26 UTC

Permalink

Hi,

I can see this error happening if you configure with --disable-dlopen
--with-pmi

In opal/mca/pmix/s?/pmix_s?.c, you can try to add the static keyword before
OBJ_CLASS_INSTANCE(pmi_opcaddy_t, ...)
Or you can update the files to use unique class name (probably safer...)

Cheers,

Gilles

Post by Limin Gu
Hi,
I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2,
Any idea what might have caused this problem?
Thank you!
make[2]: Entering directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
CC class/opal_bitmap.lo
CC class/opal_free_list.lo
CC class/opal_hash_table.lo
CC class/opal_hotel.lo
CC class/opal_tree.lo
CC class/opal_list.lo
CC class/opal_graph.lo
CC class/opal_object.lo
CC class/opal_lifo.lo
CC class/opal_fifo.lo
CC class/opal_pointer_array.lo
CC class/opal_value_array.lo
CC class/opal_ring_buffer.lo
CC class/opal_rb_tree.lo
CC errhandler/opal_errhandler.lo
CC memoryhooks/memory.lo
CC runtime/opal_progress.lo
CC runtime/opal_finalize.lo
CC runtime/opal_init.lo
CC runtime/opal_params.lo
CC runtime/opal_info_support.lo
CC runtime/opal_progress_threads.lo
CC threads/condition.lo
CC threads/mutex.lo
CC threads/thread.lo
CC threads/wait_sync.lo
CC dss/dss_internal_functions.lo
CC dss/dss_compare.lo
CC dss/dss_copy.lo
CC dss/dss_dump.lo
CC dss/dss_load_unload.lo
CC dss/dss_lookup.lo
CC dss/dss_pack.lo
CC dss/dss_peek.lo
CC dss/dss_print.lo
CC dss/dss_register.lo
CC dss/dss_unpack.lo
CC dss/dss_open_close.lo
CCLD libopen-pal.la
multiple definition of `pmi_opcaddy_t_class'
first defined here
collect2: ld returned 1 exit status
make[2]: *** [libopen-pal.la] Error 1
make[2]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
make: *** [all-recursive] Error 1
error: Bad exit status from /var/tmp/rpm-tmp.EtuXQa (%build)
--
*Limin Gu* | Software Engineer
____________________________
*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538
*p.* *415.954.2800 <415.954.2800>*
*Changing the world through technical innovation*
www.penguincomputing.com
www.penguincomputing.iapplicants.com

Limin Gu

2016-09-27 18:36:28 UTC

Permalink

Thanks Gilles!

I added "static" keyword as you suggested, the build succeeded.

Will this be fixed in later release?

Thanks again!

*Limin Gu* | Software Engineer

____________________________

*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538

*p.* *415.954.2800 <415.954.2800>*

*e. ****@penguincomputing.com

*Changing the world through technical innovation*

www.penguincomputing.com

www.penguincomputing.iapplicants.com

*Follow us on Twitter: @PenguinHPC*

On Tue, Sep 27, 2016 at 11:51 AM, Gilles Gouaillardet <

Post by Gilles Gouaillardet
Hi,
I can see this error happening if you configure with --disable-dlopen
--with-pmi
In opal/mca/pmix/s?/pmix_s?.c, you can try to add the static keyword before
OBJ_CLASS_INSTANCE(pmi_opcaddy_t, ...)
Or you can update the files to use unique class name (probably safer...)
Cheers,
Gilles

_______________________________________________
users mailing list
https://rfd.newmexicoconsortium.org/mailman/listinfo/users

Gilles Gouaillardet

2016-09-28 02:04:15 UTC

Permalink

Yes, that is the plan :-)

the patch (pending for review) can be downloaded at
https://patch-diff.githubusercontent.com/raw/open-mpi/ompi/pull/2131.patch

(and the Pull Request is at
https://github.com/open-mpi/ompi/pull/2131/files)

Cheers,

Gilles

Post by Limin Gu
Thanks Gilles!
I added "static" keyword as you suggested, the build succeeded.
Will this be fixed in later release?
Thanks again!
*Limin Gu* | Software Engineer
____________________________
*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538
*p.**415.954.2800 <tel:415.954.2800>*
/Changing the world through technical innovation/
www.penguincomputing.com <http://www.penguincomputing.com/>
www.penguincomputing.iapplicants.com
<http://www.penguincomputing.iapplicants.com/>
On Tue, Sep 27, 2016 at 11:51 AM, Gilles Gouaillardet
Hi,
I can see this error happening if you configure with
--disable-dlopen --with-pmi
In opal/mca/pmix/s?/pmix_s?.c, you can try to add the static keyword before
OBJ_CLASS_INSTANCE(pmi_opcaddy_t, ...)
Or you can update the files to use unique class name (probably safer...)
Cheers,
Gilles
On Wednesday, September 28, 2016, Limin Gu
Hi,
I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2,
Any idea what might have caused this problem?
Thank you!
make[2]: Entering directory
`/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
CC class/opal_bitmap.lo
CC class/opal_free_list.lo
CC class/opal_hash_table.lo
CC class/opal_hotel.lo
CC class/opal_tree.lo
CC class/opal_list.lo
CC class/opal_graph.lo
CC class/opal_object.lo
CC class/opal_lifo.lo
CC class/opal_fifo.lo
CC class/opal_pointer_array.lo
CC class/opal_value_array.lo
CC class/opal_ring_buffer.lo
CC class/opal_rb_tree.lo
CC errhandler/opal_errhandler.lo
CC memoryhooks/memory.lo
CC runtime/opal_progress.lo
CC runtime/opal_finalize.lo
CC runtime/opal_init.lo
CC runtime/opal_params.lo
CC runtime/opal_info_support.lo
CC runtime/opal_progress_threads.lo
CC threads/condition.lo
CC threads/mutex.lo
CC threads/thread.lo
CC threads/wait_sync.lo
CC dss/dss_internal_functions.lo
CC dss/dss_compare.lo
CC dss/dss_copy.lo
CC dss/dss_dump.lo
CC dss/dss_load_unload.lo
CC dss/dss_lookup.lo
CC dss/dss_pack.lo
CC dss/dss_peek.lo
CC dss/dss_print.lo
CC dss/dss_register.lo
CC dss/dss_unpack.lo
CC dss/dss_open_close.lo
CCLD libopen-pal.la <http://libopen-pal.la>
multiple definition of `pmi_opcaddy_t_class'
first defined here
collect2: ld returned 1 exit status
make[2]: *** [libopen-pal.la <http://libopen-pal.la>] Error 1
make[2]: Leaving directory
`/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
make: *** [all-recursive] Error 1
error: Bad exit status from /var/tmp/rpm-tmp.EtuXQa (%build)
--
*Limin Gu* | Software Engineer
____________________________
*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538
*p.**415.954.2800 <tel:415.954.2800>*
/Changing the world through technical innovation/
www.penguincomputing.com <http://www.penguincomputing.com/>
www.penguincomputing.iapplicants.com
<http://www.penguincomputing.iapplicants.com/>
_______________________________________________
users mailing list
https://rfd.newmexicoconsortium.org/mailman/listinfo/users
<https://rfd.newmexicoconsortium.org/mailman/listinfo/users>
_______________________________________________
users mailing list
https://rfd.newmexicoconsortium.org/mailman/listinfo/users