I apologize. I did not realize that I did not reply to the list.
released version 18.10. I had just installed 18.7 within the last couple
weeks.
The problem is resolved in 18.10.
Post by Gilles GouaillardetFolks,
sorry for the late follow-up. The config.log was indeed sent offline.
configure:294375: checking for required lustre data structures
configure:294394: pgcc -O -DNDEBUG -Iyes/include -c conftest.c
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 157)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 157)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 158)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 158)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 159)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 159)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 160)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 160)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 161)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 161)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 162)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 162)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 163)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 163)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 164)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 164)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 211)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 211)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h: 212)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 212)
PGC/x86-64 Linux 18.7-0: compilation completed with severe errors
configure:294401: $? = 2
configure:294415: result: no
configure:294424: error: Lustre support requested but not found. Aborting
Here is the conftest.c that triggers the error
#include "lustre/lustreapi.h"
void alloc_lum()
{
int v1, v3;
v1 = sizeof(struct lov_user_md_v1) +
LOV_MAX_STRIPE_COUNT * sizeof(struct lov_user_ost_data_v1);
v3 = sizeof(struct lov_user_md_v3) +
LOV_MAX_STRIPE_COUNT * sizeof(struct lov_user_ost_data_v1);
}
The same code was reported to work with gcc compiler, so at that
stage, this looks like
a PGI or an environment issue (sometimes the sysadmin has to re-run
makelocalrc if some dependencies have changed),
so I recommend this error is submitted to PGI support.
I reviewed the code and filled a PR that get rids of the
"-Iyes/include" flag.
Merged or not, that does not fix the real issue here.
Cheers,
Gilles
Post by Gabriel, EdgarGilles submitted a patch for that, and I approved it a couple of days
back, I *think* it has not been merged however. This was a bug in the
Open MPI Lustre configure logic, should be fixed after this one however.
https://github.com/open-mpi/ompi/pull/6080
Thanks
Edgar
-----Original Message-----
Robert J. via users
Sent: Tuesday, November 27, 2018 2:03 PM
Subject: Re: [OMPI users] Building OpenMPI with Lustre support using PGI fails
Post by g***@rist.or.jpRaymond,
can you please compress and post your config.log ?
I didn't see the config.log in response to this. Maybe Ray and
Giles took the
discusison off list? As someone who might have introduced the
offending
configure-time checks, I'm particularly interested in fixing lustre detection.
==rob
Post by g***@rist.or.jpCheers,
Gilles
----- Original Message -----
Post by Raymond MunoI am trying to build OpenMPI with Lustre support using PGI 18.7 on
CentOS 7.5 (1804).
It builds successfully with Intel compilers, but fails to find the
necessary Lustre components with the PGI compiler.
I have tried building OpenMPI 4.0.0, 3.1.3 and 2.1.5. I can build
OpenMPI, but configure does not find the proper Lustre files.
Lustre is installed from current client RPMS, version 2.10.5
Include files are in /usr/include/lustre
--- MCA component fs:lustre (m4 configuration macro) checking for
MCA component fs:lustre compile mode... dso checking --with-lustre
value... simple ok (unspecified value) looking for header without
includes checking lustre/lustreapi.h usability... yes checking
lustre/lustreapi.h presence... yes checking for
lustre/lustreapi.h... yes checking for library containing
llapi_file_create... -llustreapi checking if liblustreapi requires
libnl v1 or v3...
checking for required lustre data structures... no
configure: error: Lustre support requested but not found. Aborting
--
Ray Muno
IT Manager
University of Minnesota
Aerospace Engineering and Mechanics Mechanical
Engineering
110 Union St. S.E. 111 Church Street SE
Minneapolis, MN 55455 Minneapolis, MN 55455
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