[OMPI users] ORTE_ERROR_LOG: Pack data mismatch in openmpi-master-201810190352-8db5aaa

[Siegmar Gross]

Hi,

I've installed openmpi-master-201810190352-8db5aaa on my "SUSE Linux
Enterprise Server 12.3 (x86_64)" with Sun C 5.15 (Oracle Developer
Studio 12.6), gcc-6.4.0, icc-19.x, and pgcc-18.4 Unfortunately, I get
the following error for gcc, icc, and pgcc. I'm still unable to build
a version with Sun C due to the error that I reported some time ago
(https://users.open-mpi.narkive.com/lvQKElru/ompi-users-error-building-openmpi-master-201810050304-5f1c940-on-linux-with-sun-c).

loki config_files 139 head -7
/export2/src/openmpi-master/openmpi-master-201810190352-8db5aaa-Linux.x86_64.64_gcc/config.log
| tail -1
$ ../openmpi-master-201810190352-8db5aaa/configure
--prefix=/usr/local/openmpi-master_64_gcc
--libdir=/usr/local/openmpi-master_64_gcc/lib64
--with-jdk-bindir=/usr/local/jdk-11/bin
--with-jdk-headers=/usr/local/jdk-11/include JAVA_HOME=/usr/local/jdk-11
LDFLAGS=-m64 -L/usr/local/cuda/lib64 CC=gcc CXX=g++ FC=gfortran CFLAGS=-m64
-I/usr/local/cuda/include CXXFLAGS=-m64 -I/usr/local/cuda/include FCFLAGS=-m64
CPP=cpp -I/usr/local/cuda/include CXXCPP=cpp -I/usr/local/cuda/include
--enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java
--with-cuda=/usr/local/cuda --with-valgrind=/usr/local/valgrind
--with-hwloc=internal --without-verbs --with-wrapper-cflags=-std=c11 -m64
--with-wrapper-cxxflags=-m64 --with-wrapper-fcflags=-m64 --enable-debug


loki config_files 139 ompi_info | grep "OPAL repo revision:"
OPAL repo revision: v2.x-dev-6365-g8db5aaa


loki config_files 140 cat rf_loki
# Rankfile to bind processes to specific cores, sockets, ... This
# file can be used for openmpi-1.7.x or newer which use ";" to
# separate sockets and have different options than older versions.
#
#
# Usage:
# mpiexec -report-bindings -np 1 -rf rf_loki hostname
#
#
# File: rf_loki Author: S. Gross
# Date: 04.08.2017
#

rank 0=loki slot=0:0;1:0


loki config_files 141 mpiexec -report-bindings -np 1 -rf rf_loki hostname
[loki:14821] OPAL dss:unpack: got type 27 when expecting type 3
[loki:14821] [[42585,0],0] ORTE_ERROR_LOG: Pack data mismatch in file
../../../../openmpi-master-201810190352-8db5aaa/orte/mca/odls/base/odls_base_default_fns.c
at line 625
loki config_files 142



I would be grateful, if somebody can fix the problem. Do you need anything
else? Thank you very much for any help in advance.


Kind regards

Siegmar